Difference between revisions of "Jmol testpage"
From NMReDATA
(mime.types file) |
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Note that I could not find a | Note that I could not find a | ||
<code>includes/mime.types</code> file in main wiki folder ... | <code>includes/mime.types</code> file in main wiki folder ... | ||
| Line 17: | Line 19: | ||
<jmolFile>Chair.cml</jmolFile> | <jmolFile>Chair.cml</jmolFile> | ||
</nowiki></code> | </nowiki></code> | ||
| − | == this | + | == this also works... == |
| − | + | ||
<jmol> | <jmol> | ||
<jmolApplet> | <jmolApplet> | ||
| − | <uploadedFileContents> Chair.cml | + | <uploadedFileContents>Chair.cml</uploadedFileContents> |
</jmolApplet> | </jmolApplet> | ||
</jmol> | </jmol> | ||
| − | |||
| − | |||
| − | |||
<code><nowiki> | <code><nowiki> | ||
<jmol> | <jmol> | ||
<jmolApplet> | <jmolApplet> | ||
| − | < | + | <uploadedFileContents>Chair.cml</uploadedFileContents> |
</jmolApplet> | </jmolApplet> | ||
</jmol> | </jmol> | ||
</nowiki></code> | </nowiki></code> | ||
| − | + | == this also works... == | |
| − | |||
| − | |||
| − | |||
<jmol> | <jmol> | ||
<jmolApplet> | <jmolApplet> | ||
| − | <inlineContents> | + | <name>C</name> |
| + | <color>lightGray</color> | ||
| + | <size>400</size> | ||
| + | <caption>demo - note: needs at least one char on first line of inline content</caption> | ||
| + | <inlineContents> | ||
| + | Menthol | ||
OpenBabel02151916433D | OpenBabel02151916433D | ||
| Line 107: | Line 108: | ||
11 31 1 0 0 0 0 | 11 31 1 0 0 0 0 | ||
M END | M END | ||
| − | + | </inlineContents> | |
| + | </jmolApplet> | ||
| + | |||
| + | <jmolButton> | ||
| + | <script> spacefill on </script> | ||
| + | <text> spacefill </text> | ||
| + | <target> C </target> | ||
| + | </jmolButton> | ||
| + | |||
| + | <jmolLink> | ||
| + | <script> spacefill 2% </script> | ||
| + | <text> ball and stick </text> | ||
| + | <target> C </target> | ||
| + | </jmolLink> | ||
| + | |||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked> spin on </scriptWhenChecked> | ||
| + | <scriptWhenUnchecked> spin off </scriptWhenUnchecked> | ||
| + | <checked> false </checked> | ||
| + | <text> spin </text> | ||
| + | <target> C </target> | ||
| + | </jmolCheckbox> | ||
| + | |||
| + | <jmolMenu> | ||
| + | <target> C </target> | ||
| + | <item> | ||
| + | <text> color CPK </text> | ||
| + | <checked> true </checked> | ||
| + | <script> color cpk </script> | ||
| + | </item> | ||
| + | <item> | ||
| + | <text> blue </text> | ||
| + | <script> color dodgerBlue </script> | ||
| + | </item> | ||
| + | <item> | ||
| + | <text> green </text> | ||
| + | <script> color green </script> | ||
| + | </item> | ||
| + | </jmolMenu> | ||
| + | |||
| + | <jmolRadioGroup> | ||
| + | <target> C </target> | ||
| + | <vertical>false</vertical> | ||
| + | <item> | ||
| + | <text> color CPK </text> | ||
| + | <checked> true </checked> | ||
| + | <script> color cpk </script> | ||
| + | </item> | ||
| + | <item> | ||
| + | <text> blue </text> | ||
| + | <script> color dodgerBlue </script> | ||
| + | </item> | ||
| + | <item> | ||
| + | <text> green </text> | ||
| + | <script> color green </script> | ||
| + | </item> | ||
| + | </jmolRadioGroup> | ||
| + | </jmol> | ||
| + | |||
| + | == Using script == | ||
| + | <jmol> | ||
| + | |||
| + | <jmolApplet> | ||
| + | <name>A</name> | ||
| + | <title>This box might hold a 3D model</title> | ||
| + | <color>blueTint</color> | ||
| + | <size>500</size> | ||
| + | <script> echo Hi there! </script> | ||
| + | </jmolApplet> | ||
| + | </jmol> | ||
| + | |||
| + | |||
| + | <nowiki> | ||
| + | <jmol> | ||
| + | <jmolApplet> | ||
| + | <name>A</name> | ||
| + | <title>This box might hold a 3D model</title> | ||
| + | <color>blueTint</color> | ||
| + | <size>500</size> | ||
| + | <script> echo Hi there! </script> | ||
| + | </jmolApplet> | ||
| + | </jmol></nowiki> | ||
| + | |||
| + | </tr> | ||
| + | |||
| + | == Using urlContents == | ||
| + | <jmol> | ||
| + | <jmolApplet> | ||
| + | <name>B</name> | ||
| + | <title>A file retrieved from the PDB</title> | ||
| + | <caption>Murine adipocyte lipid binding protein at pH 4.5 (1AB0.pdb)</caption> | ||
| + | <color>blueTint</color> | ||
| + | <size>300</size> | ||
| + | <urlContents> https://files.rcsb.org/download/1ab0.pdb.gz </urlContents> | ||
| + | <pspeed>2</pspeed> | ||
| + | <controls>spin popup</controls> | ||
</jmolApplet> | </jmolApplet> | ||
</jmol> | </jmol> | ||
| − | |||
Latest revision as of 09:24, 4 March 2019
Note that I could not find a
includes/mime.types file in main wiki folder ...
- Newer MW versions locate that in
includes/libs/mime/mime.types
I may be related: I could not manage to allow the upload of .sdf .mol . But .cml files works (I followed these instructions)
this works
<jmolSmiles>aspirin</jmolSmiles>
<jmolFile>Chair.cml</jmolFile>
this also works...
<jmol>
<jmolApplet>
<uploadedFileContents>Chair.cml</uploadedFileContents>
</jmolApplet>
</jmol>
this also works...
demo - note: needs at least one char on first line of inline content
|
Using script
This box might hold a 3D model |
<jmol>
<jmolApplet>
<name>A</name>
<title>This box might hold a 3D model</title>
<color>blueTint</color>
<size>500</size>
<script> echo Hi there! </script>
</jmolApplet>
</jmol>
</tr>
Using urlContents
A file retrieved from the PDB |
Murine adipocyte lipid binding protein at pH 4.5 (1AB0.pdb)
|
